The step by step guide to Modeltest
Updated 25 Jan 2016
This guide is somewhat historic and focuses on using the windows command-line version of Modeltest to find the best parameters to construct a phylogenetic trees. You probably want to use a more modern version e.g. jModeltest2.
Guide to the windows command line for phylogenetics programs
Guide to using MrBayes
Coming soon! For now see this file for some examples.